What fertilizer should I use in aquaponics ?

Written by Ulysse Hay · September 28, 2025
Compléments nutritifs employés en aquaponie

In aquaponics, fish and bacteria provide many of the nutrients plants need. However, some nutrients can sometimes be lacking. Adding the right fertilizers then becomes essential to maintain a healthy balance. But what products can be used without harming the fish or disrupting the ecosystem ?

The Importance of Using Natural Fertilizers in Aquaponics

In aquaponics, fish produce waste that, transformed by microorganisms, becomes nutrients that can be assimilated by plants. These, in turn, filter and purify the water for the fish. This ingenious system is often sufficient to ensure good fertility. However, certain elements become lacking or inaccessible. A deficiency in iron, potassium, calcium, or magnesium can quickly slow plant growth and compromise the overall balance. This is when the addition of suitable fertilizers becomes necessary. Unlike in traditional gardening, it is not a matter of fertilizing abundantly, but of correcting with precision and moderation.

The role of fertiliser in aquaponics

The role of fertilizers in aquaponics

In aquaponics, fertilizers are supplements, not mass fertilization solutions. The goal is never to directly feed the plants as one would with conventional fertilizers, but to fill specific deficiencies that harm the system's balance. Each addition must be thought of as a fine correction, carried out with caution, because the slightest error has repercussions on the fish and the bacterial colony. In this context, fertilizer becomes a management tool, allowing productivity to be optimized while preserving the ecosystem.

Chelated iron: an essential remedy for chlorosis Chelated iron (iron chelate) EDDHA 6%

Chelated iron : essential against chlorosis

Iron is probably the most problematic nutrient in aquaponics. Often present, it quickly becomes unavailable when the pH exceeds 7. The plants then show typical symptoms of iron chlorosis : young leaves turn yellow but retain green veins. To correct this, chelated iron is used. EDDHA iron 6% is the most stable even at high pH (up to 9) and remains effective in basic soils or solutions, but it strongly colors the water and contains less active iron. EDTA iron 13% is the most concentrated and economical, but it only works well at pH below 6.5. DTPA iron 11% offers an ideal compromise: it remains stable down to neutral pH, does not alter the water color, and is ideal for aquaponic systems. A few grams are generally enough to restart growth and restore vigorous foliage. Chelated iron is therefore an essential ally, which it is wise to always have available.

Potassium: the key to resilience and fruiting Patentkali

Potassium : the key to resistance and fruiting

Without potassium, plants become fragile, flowering is reduced, and fruit develops poorly. The most visible symptoms are dried leaf edges and brittle stems. To remedy this, aquaponics generally uses potassium bicarbonate, which has the advantage of also regulating pH, or potassium sulfate, which is very effective and easily assimilated. Patentkali is also an interesting option, as it combines potassium and magnesium, a duo particularly appreciated by fruit plants. These contributions must be made with care, because an excess of potassium can hinder the absorption of other nutrients.

Epsom salt

Calcium and magnesium : an essential duo

Calcium is essential for plant structure and fruit health. Its deficiency causes deformed leaves and the famous blossom-end rot on tomatoes or peppers. Magnesium, at the heart of chlorophyll, is just as vital : its deficiency manifests itself by yellowing between the veins of old leaves. To correct these deficiencies, calcium carbonate or calcium hydroxide, which also remineralize water, and magnesium sulfate , better known as Epsom salt, are generally used. In the right doses, these contributions rebalance the system and quickly restore vigor to crops.

Natural fertilisers and organic supplements Guano

Natural fertilizers and organic supplements

Beyond mineral inputs, certain natural fertilizers can usefully complement an aquaponic system. Marine guano , rich in phosphorus, stimulates flowering and fruiting. Seaweed extracts, rich in trace elements and natural stimulators, strengthen plant resistance. Liquid organic fertilizers can also occasionally support growth. However, their use must be measured, as excess organic matter risks saturating biological filtration. These products therefore have their place as occasional "boosts," and not as a base for fertilization.

Trace elements: the details that matter

Microelements : Details that matter

While we often talk about iron, potassium, calcium, and magnesium, we must not forget about trace elements : zinc, boron, manganese, copper, etc. These nutrients, required in very small quantities, play a crucial role in the overall health of plants. Their absence sometimes leads to subtle symptoms that are difficult to identify, but which ultimately reduce productivity. To avoid these invisible deficiencies, some producers occasionally add trace element solutions adapted to aquaponics, or opt for natural extracts (seaweed, liquid compost). These micro-supplements complement the work of the fish and ensure balanced growth.

Conventional fertilisers to avoid at all costs

Conventional fertilizers to absolutely avoid

In aquaponics, not all fertilizers are suitable. Chemical fertilizers rich in nitrates or phosphates, which are very common in conventional agriculture, risk seriously unbalancing the water and endangering the fish. Products that are too concentrated or dissolve too quickly should be avoided, as should fertilizers containing heavy metals or chemical additives. The rule is simple : use only aquaponics-compatible products that are natural or specially formulated to be harmless in a living system.

The importance of monitoring and water testing 14-in-1 pond water analysis kit

The Importance of Water Monitoring and Testing

Before adding any fertilizer, it's essential to understand the system's condition. Monitoring pH, conductivity, and water hardness is essential. Regular testing allows you to anticipate deficiencies and adjust your input accurately. It's also a way to ensure that the added supplements aren't disrupting your fish. A good practice is to keep a logbook, noting each addition and its visible effects on your plants. Over time, this monitoring becomes a valuable basis for better understanding your system and avoiding mistakes.

Best practice for using fertilisers

Good practices for using fertilizers

The key to using fertilizers in aquaponics can be summed up in two words : moderation and observation. It's better to split the inputs and introduce them gradually rather than adding a massive dose that would upset the balance. After each addition, you must carefully observe the plants and also monitor the system's reaction (water, fish, bacteria). Aquaponics-compatible fertilizers are designed to limit risks, but their effectiveness depends on careful management.

In conclusion

Using fertilizers in aquaponics isn't an admission of failure, but a natural step in managing a complex system. Fish and bacteria provide the essentials, but some nutrients require targeted supplements. Chelated iron, potassium, calcium, magnesium, trace elements, and even marine guano are all suitable solutions, provided they are used wisely. Aquaponics, more than a growing method, is a lifelong learning process : one of balance. By observing your plants, monitoring your parameters, and choosing compatible products, you'll turn each adjustment into an opportunity to strengthen your system's stability and improve its productivity.

Sources

Eck, Körner et Jijakli, Nutrient Cycling in Aquaponics Systems, Springer, 2019, Proportion of dietary nitrogen retained by fish, and typical deficiencies in potassium, calcium and magnesium.

Yang and Kim, Characterizing Nutrient Composition and Concentration in Tomato-, Basil-, and Lettuce-Based Aquaponic and Hydroponic Systems, Water, 2020, Comparative concentrations of potassium, calcium and magnesium, and conductivity levels.

Tsoumalakou et al., Precise Monitoring of Lettuce Functional Responses to Minimal Nutrient Supplementation, Agriculture, 2022, Dose of DTPA chelated iron used and the effect of combining iron and potassium.

New Mexico State University, Aquaponics, Circular 680, Influence of pH on nutrient availability, including iron.

Oklahoma State University Extension, Nitrification and Maintenance in Media Bed Aquaponics, Working pH ranges and monitoring nitrification after a correction.

SMIDAP, Rapport du programme OPRA 2 sur l'aquaponie, French field experience on water monitoring and nutritional corrections.

Frequently asked questions

Always adjust it first. Above pH 7, a portion of the iron precipitates and becomes unavailable to the roots: you would be dosing into nothing and loading the water pointlessly.

Because the nutrient source is a fish feed, not a formulated fertiliser. The review by Eck, Körner and Jijakli notes that approximately 30% of the nitrogen supplied by the feed is retained by the fish themselves; only the remainder circulates, and for other elements the proportion actually available is even lower.

The figures speak for themselves. A study published in Water in 2020 measured, across comparable installations, approximately 75 mg per litre of potassium in aquaponics versus 333 in hydroponics, 18 mg of calcium versus 146, and 1.6 mg of magnesium versus 40. Nitrogen, by contrast, remained in a similar range.

This is precisely the purpose of the supplements described above: it is not nitrates that are lacking, but cations. A system that appears to be running well can therefore plateau due to a shortage of potassium or magnesium even when all your nitrogen tests are showing perfect results.

Never correct two parameters on the same day, as you will no longer be able to tell what made the difference. The order that saves time:

  • Start by measuring pH and carbonate hardness, and bring the pH into the working range before adding anything else.
  • Check the feed ration given to the fish: an underfed system will produce widespread deficiencies that no fertiliser will correct in the long term.
  • Then address iron, whose deficiency is the most common and the quickest to resolve.
  • Wait around ten days, then consider potassium, calcium, or magnesium depending on the symptoms that persist.

Record every intervention and its date: it is the only way to attribute an improvement to the right cause.

The doses found in the literature provide a guideline rather than a rule. A trial published in Agriculture in 2022 applied iron in the form of DTPA chelate at 40 µmol per litre, equivalent to just over 2 mg of iron per litre of system water, and recorded a net yield gain in lettuce when combined with potassium.

In a home setup, split the dose: apply half the target amount, observe for ten to fifteen days, then add the remainder if the young leaves have not regained their green colour. Add the product in the evening, as darkness slows the degradation of the chelate.

Some of them, yes. Copper and zinc, found in many horticultural trace element solutions, are toxic to fish and invertebrates at doses that remain harmless to plants. A large addition of soluble salts will also cause a sharp spike in conductivity. The safe approach is to dilute in a bucket of system water, pour slowly into the return zone, and never double a dose on the grounds that nothing seemed to happen.

No, and relying on it alone is misleading. Conductivity adds up all dissolved ions without distinguishing between them: water high in carbonates and low in potassium will give the same reading as a well-balanced solution. Research published in Water in 2020 also recorded conductivity values two to three times lower in aquaponics than in hydroponics, with no adverse effect on lettuce growth.

Use it as a trend indicator, noted in your logbook, and leave diagnosis to foliar symptoms.

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